NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1001619

Scaffold Ga0255147_1001619


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1001619 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5548
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F003582Metagenome / Metatranscriptome478Y
F012975Metagenome / Metatranscriptome275Y
F016396Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100161913F016396GGAGLRKSERLRLLEMQVVRLEMMVELYTQALNNLLESQGMGVNNLDAGKWYADKLDKLNKK
Ga0255147_10016192F003582N/AMNTYSIKLEINAEVQAFSEEDAVDYANDIFGVDDEVKNVKVVSVKEK
Ga0255147_10016195F012975AGGAMLNLTLKGVEVFIKRSQTNKQESYWDNYDLMIWKEDSGGFTSVKGMFRRNNWGIAERVSVSKDGVWKLPKKYVRYFK
Ga0255147_10016197F000473AGGAMELIGNKDHFKHGINLWNGEPNKPVFYNEEMRKKLREIKKPVQDLMMDVVQYPDFLALRLYEDNFIQYQGTRKEMVIDYVSKVKRLIESYGVRCELEGVPSEKILRSS
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