NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1003972

Scaffold Ga0255147_1003972


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1003972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3436
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008943Metagenome / Metatranscriptome325Y
F016800Metagenome / Metatranscriptome244Y
F018913Metagenome / Metatranscriptome232Y
F090316Metagenome / Metatranscriptome108N
F101046Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100397213F008943N/AMKFEGFDWAIFSLFFGIIVAGSIITYGEQQQRVLFQQTYNKNLECRQELKGQTVVRVNEICGEVPVIGDFVK
Ga0255147_10039722F018913N/AMTNQQIAQELLKVICKSEAHNTAWMLQEVLQHLRKQLSGNNVIDFYDEQGMMYNYGWDDCLKEIDGICDELELL
Ga0255147_10039724F090316AGGAGGMPDDLQREEEIFLKALKEYKEKKTQEPTDKTTNTLPAVIAAVL
Ga0255147_10039726F101046GAGGMDITEYGVSLEPEELREIITGKMGFRKCPDCQGEGESWTLHYVLADDLDQDNEQFKEVSAQFAADFDEDNLPPQYSFGECHLYSCETCHGVGYVPIGGY
Ga0255147_10039728F016800AGGAMLDAFTDYPIPSYGDVAGEKAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTDEELKTLPWTEVSFPHSI
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