NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1005569

Scaffold Ga0255147_1005569


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1005569 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2868
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005529Metagenome / Metatranscriptome397Y
F042328Metagenome158Y
F065775Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10055691F065775N/AMSNFQLNFNSPKKVVSITLDEEEGIFQLAYLFKKLLDDAGIANKVEEKEVEAVEATEVGNEK
Ga0255147_10055692F042328N/AMNDKPKVRLGNGKKKSASWLTAAICISDAETHAYTYNGKKYVNVNINIYDKPNEYGKDVAITLNDYKKEEGAAPQANKMPTAPVPYQAEEYDLPF
Ga0255147_10055697F005529N/AMLPTSKPDYSLEMRFKTSSGDWSQWINKGKGLFQSIEIVQHQIRLITAPHRGKEIEVRFEWNGWLCDYSGLPTGEVIRLK
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