NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1007379

Scaffold Ga0255147_1007379


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1007379 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2470
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013526Metagenome / Metatranscriptome270Y
F037190Metagenome / Metatranscriptome168Y
F038479Metagenome / Metatranscriptome166Y
F073599Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100737910F013526AGGAMKKNVLISFVTEADTDLEAVFDLNKIFLALPESELKKFDVFDVLEVVE
Ga0255147_10073792F038479AGGAMTSLTLEQKIIKAAHLIADGKLVSFRGASFDTYMKVERLANRIKQEREFPQCPCGECD
Ga0255147_10073793F073599AGAAGGMSANLYNIESLLIGKPYRSRSVEGEIVDAEKHPKCVYYADAEAYLVRIRKSMGGYTYRTVAVSVA
Ga0255147_10073794F037190AGGAMDRYLLIELGSDGIAFETAQFDFYASWLGIGIAIVSVVAYKIYKNRK
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