Basic Information | |
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Taxon OID | 3300024289 Open in IMG/M |
Scaffold ID | Ga0255147_1009204 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2186 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F015839 | Metagenome / Metatranscriptome | 251 | Y |
F021491 | Metagenome / Metatranscriptome | 218 | Y |
F023804 | Metagenome | 208 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0255147_10092042 | F021491 | N/A | MSVEKKIEEIVLGYLKRAEGRTAIMSPQDIAKIVRDAAHKGAMLGYDAGMKMARHSHGKELEIAEMSVKELTERVRQLELELIASQ |
Ga0255147_10092044 | F023804 | AGGA | MTETLYKFNCEVEGVELTCHLEYEPAEFNHGEAPDFPACMNLVNAYCDKVDIAHLLMQSIVDHICEEALTQFNSESEL |
Ga0255147_10092045 | F015839 | AGGAG | MKATNFTATVASDLYQAGYSCDGHPFIAEQFYVVIENDAGRRFRHNAIFKGTQQVVCEETGDAYFPDMREEATEKAERLVARINAAIQVGVELNNACWFEVDPAYGSEEFISQGIDAKRAFEDRSSV |
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