NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1025468

Scaffold Ga0255147_1025468


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1025468 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F005092Metagenome / Metatranscriptome412Y
F006744Metagenome / Metatranscriptome365Y
F007363Metagenome / Metatranscriptome352Y
F024549Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10254681F000447N/AMGYIEIFRMNDEGAGWVDLSEATPQELLDLEIGLFQEGAL
Ga0255147_10254682F007363GGAMSVGFGKIANLKKGKLMRAYSIVDLLVDTYYAPTSLRRRFNGGIINHAEKREDVYPPEGYEAFAIRYRPTGRLNDEWATVAVRISDY
Ga0255147_10254683F006744AGGAMKLDEFKAFIIAQREASKAEALSVLTATITNNNNERETKNG
Ga0255147_10254684F005092GGAMDKLETALKAIQNCDLCAGVGAHYWSSGDEFDFENCECNPYELILDNDGDVIWDNGLLSEPELFTTLEAK
Ga0255147_10254685F024549GGAGGMYKLFTYYDGKLEFTHQFSDALEAFEAFARCKDVGFAIENATYNLEMPTGKMYTKNFDRIGLVSIR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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