NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0224556_1043125

Scaffold Ga0224556_1043125


Overview

Basic Information
Taxon OID3300024295 Open in IMG/M
Scaffold IDGa0224556_1043125 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1121
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005058Metagenome / Metatranscriptome413Y
F035859Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0224556_10431251F005058N/AAKTHKDMYSIPCSSLWPAVKDTLRNSGKYGIIGIDNTEMTASFNIGGTLAAKRVNSVVLNTKPEGCEMQIQTAFSGLTNDDAGDFKKRVDKSLAQIQAASSSTPAKTESPAK
Ga0224556_10431252F035859AGGAMKFATFSKSVVMGLALLLASSALAATKGSLQLNNPVSVNGTQLKAGDYKLQWEGSGPDVELSIMQGKTVIAKVPAHVVDLDTPAADNAAITRKNGGGSSELAGVRFQGKKFSLQLADVGDGMSAGSSK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.