NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228658_1017669

Scaffold Ga0228658_1017669


Overview

Basic Information
Taxon OID3300024297 Open in IMG/M
Scaffold IDGa0228658_1017669 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 71D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1855
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F003920Metagenome / Metatranscriptome462Y
F088730Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0228658_10176691F003920N/AMLLRVLLIYCVLTTVAYAFHLNTFAVWELKEELQIRMMNLWELFQQLEYVTQEQRIIVYEEIDHIRQDIQRIIDQLIEHDRGQHP
Ga0228658_10176693F002182AGGAMIYTDQEHEWLSKPAKKNKRVSNQTADGRPPESKDLRKHDWAIKTTIEVDGKQYVVPVQV
Ga0228658_10176694F088730AGGMIQRNRQRNTPYLMPFKRDITRFYMNVASRINFYGWSIRNGHKT
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Institute for Fundamental Biomedical Research
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