Scaffold Ga0247666_1000981

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247666_1000981

Scaffold Ga0247666_1000981

Overview

Basic Information
Taxon OID	3300024323 Open in IMG/M
Scaffold ID	Ga0247666_1000981 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6614
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075774	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247666_10009818	F075774	AGGA	MRVYIASMFSDKDRVVQRAKELADLGIECTSRWASETVPHNVTMQDCKEDYLRETAVVDIQDILRSDVVVLTVPEPQLLVDATVGSSSRGGRHFESGFVYGLILSQAMEGGRPTRELVVLGRKENVFHCLDGLGVTSIYPAIKTLETWNEVKNYLAGNAGA

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