NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247666_1035158

Scaffold Ga0247666_1035158


Overview

Basic Information
Taxon OID3300024323 Open in IMG/M
Scaffold IDGa0247666_1035158 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031279Metagenome / Metatranscriptome183Y
F090924Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0247666_10351581F090924N/ASLTVTVNHTIDPFDPTEFPAGTVCVTYSQNGGRCDQYDFTGTSGGPNGVPVKNTDYKGLIALTLSYFSSQLVHEPAFAHAPGDITTFTEDILTSYSTLTICGVSGCPDPTMGGTTPGLSSVAALDEPLADNGTDTFCSLTQTSTNNPSGQKSQIEVALKMVSGSDCSAAGLRDKTARLSVSTIDINGNVSFPALKNVEGNKFHWDNKAGLNEYDISTDGLISGQTYTITVISSKISPQSITFVAP
Ga0247666_10351582F031279N/ANTHQYPAARKELETSLDTSEKLGLQVLLARSHYLLGRTLELSGSGGAAEAAPHYATAKRMLEAIRQESGSDVILKRQDLTAISAQPAGQP
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