NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137417_1032030

Scaffold Ga0137417_1032030


Overview

Basic Information
Taxon OID3300024330 Open in IMG/M
Scaffold IDGa0137417_1032030 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F058360Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0137417_10320302F005268GAGGVSGSDEETEQQQLWRALSEAGLVEIRLDEFAERIKDVKRIVTVRLRELLDFNTGIKERESAAYSLGTLKGLELKVLANAPKPPDPSEM
Ga0137417_10320303F003832GGAMVTFESSTGPETTVLKEVRWGLVWRDFILEDGRVIPEHRILGCPQPQVWRKINEVTDSEREECEERLLSMARSGMDPHQREQSFWAELNQYLAYTYLRFKPAGYKVQDTVQDTDR
Ga0137417_10320304F058360N/AYNAFTLVWIGYLKRQPQLVPRIEAAPSAHTFGMALAASAPVPDPDASFMLRVEQAVDRVLSRSDWPRPTTTGSRIVSRKPNPEEGN
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