NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247668_1000667

Scaffold Ga0247668_1000667


Overview

Basic Information
Taxon OID3300024331 Open in IMG/M
Scaffold IDGa0247668_1000667 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8017
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021377Metagenome / Metatranscriptome219Y
F037774Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0247668_10006673F021377AGGAGMNASQETRNPAPTLTPEALVDQLRATRAQIGEVAPLTPAERQSLRNRTRTSNPVLQASINVIGALDIVEQAVGQPADEVRQLYDDANRWTAVEDELRGMLNGVSGANLIRRQRLAFIASQAYNIGTRLARDPAYAVLVPHLQEIKRLKSFKRRKKAAQAPAPEPPAQEDPATPDGSEP
Ga0247668_10006679F037774N/AMASCDARRPAQVRIAPPPRNEVNFATIDSPSLQFLPRQQEAQIWRLEEDPIVIPGDHLNTYLGPVEAPRFARYETLDLTIGKYSTPAGAGFATVEIFRFPDFVKAFGAYSQQKSGNVRFLDIPNESFAKAHSVHVWRGPFYVRITGAGDGDAVLRLARFVSDRMPPAPSKPAVFAFLPDGHRVTGSERYSADSAFGQVFLANSFQATFNVDNDVIEGIVIPAANKQTAENILDQYKGLYLHNGKLLDPIPNLGEDNFTAEDRFLGRVVAFRIDRFIVAFNGFHERQHLLDLATAADQRILGTIRKQLVNADQNDNANDRNSPTVPAWMKRR
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Institute for Fundamental Biomedical Research
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