Basic Information | |
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Taxon OID | 3300024331 Open in IMG/M |
Scaffold ID | Ga0247668_1000667 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8017 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021377 | Metagenome / Metatranscriptome | 219 | Y |
F037774 | Metagenome | 167 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247668_10006673 | F021377 | AGGAG | MNASQETRNPAPTLTPEALVDQLRATRAQIGEVAPLTPAERQSLRNRTRTSNPVLQASINVIGALDIVEQAVGQPADEVRQLYDDANRWTAVEDELRGMLNGVSGANLIRRQRLAFIASQAYNIGTRLARDPAYAVLVPHLQEIKRLKSFKRRKKAAQAPAPEPPAQEDPATPDGSEP |
Ga0247668_10006679 | F037774 | N/A | MASCDARRPAQVRIAPPPRNEVNFATIDSPSLQFLPRQQEAQIWRLEEDPIVIPGDHLNTYLGPVEAPRFARYETLDLTIGKYSTPAGAGFATVEIFRFPDFVKAFGAYSQQKSGNVRFLDIPNESFAKAHSVHVWRGPFYVRITGAGDGDAVLRLARFVSDRMPPAPSKPAVFAFLPDGHRVTGSERYSADSAFGQVFLANSFQATFNVDNDVIEGIVIPAANKQTAENILDQYKGLYLHNGKLLDPIPNLGEDNFTAEDRFLGRVVAFRIDRFIVAFNGFHERQHLLDLATAADQRILGTIRKQLVNADQNDNANDRNSPTVPAWMKRR |
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