NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255061_10486053

Scaffold Ga0255061_10486053


Overview

Basic Information
Taxon OID3300024342 Open in IMG/M
Scaffold IDGa0255061_10486053 Open in IMG/M
Source Dataset NameMetatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)646
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium parakroppenstedtii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067282Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0255061_104860532F067282AGGVISLEKPQRKWSSSRLEGKTSWIFSSCGRCSRLTTGPSGTRSGCLRKGQSPCEFLGGLSGFLSPRFRGLRPCVESGPEPEDYSPVLTWILGYFWSLPRGVSPRLQCGHALALSSRAVAAVSRIPPRGSKDLRFSLESFPRGFATRLSHRAVPRAHVVAVDARLERQGSAGKSGSSGMD
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