Scaffold Ga0244777_10023642

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244777_10023642

Scaffold Ga0244777_10023642

Overview

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10023642 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3889
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F085159	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100236422	F005879	N/A	MFENTIFWKDTFDGEKAQGGIFYRAVDLKKFMELVEANENGNGGEIVGIRFDENNVEFIVKK
Ga0244777_100236425	F085159	GGA	MLKVADKGAFNLIDVRMNSPKNRGNNISKKYNYQWIAPERTGSRKVSEVLAYYDFKCTNKPLNAFGMYNYNHAIEPNEEGTDYKVICNARNPYGRVYSIFKNFFHPIEDKSKEGFRKYLTEDLPRGQTMTMVVIEKWDKPFDYVIRLEHMKDDLMKLPFILDVLTESQVDMLSSHGKEIEDWEPFYDDEMKEIVYEYTKHQFKFWGYEK

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