NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10000285

Scaffold Ga0209992_10000285


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10000285 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69521
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (20.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F024886Metagenome / Metatranscriptome204Y
F031892Metagenome / Metatranscriptome181Y
F035957Metagenome / Metatranscriptome171Y
F066695Metagenome / Metatranscriptome126Y
F084085Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000028539F035957N/AMSKPQYFSDLTLKQMFKYHDHTYMMSDDFRAYENGRAQQDIINDKVEAEGGWTKELCKLWNKYAPNDEAFQKDYEWIKKYSK
Ga0209992_1000028543F024093GAGGMFKINDMATIKQMDIVAKEISKDIIEEIYKQCDWQIGQFLPESSEGTEINEAHSYLMRLVGRHIANKLDVTTNKYYDE
Ga0209992_1000028546F066695AGGMELLTDDIINEALQTDGIMEEPDANWLMEYINSEYGGTLDHNTSWCDKKHMLKIYSESTYDGYDIWWCTHDERPYVSQDGFYYEDYTEWSSRAIDELTSGSDVWVEPHVWDDMEYEFNHELEQWWQDVYEDLFNDKKDELLDSGDYYEDEENKQ
Ga0209992_1000028548F031892N/AMTSLEFNVLVDELDSHAQQTMNKKGPEYTTGNEDVLNNFKSTAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGFALFRERDDV
Ga0209992_1000028549F084085GGAGMLSLALHYSEKEMMCKDVMVTLLSLIEKEMKKRIEHSYFEEESDKWSNFHGQLRNIRLTIKNGGIK
Ga0209992_1000028554F024886N/AMSRKFKNEVLWRVTVNVNGKQEYSINETNYDQLCDKLTDIMIRETL
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