NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10002107

Scaffold Ga0209992_10002107


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10002107 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18998
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F024570Metagenome205Y
F033836Metagenome176Y
F038272Metagenome166Y
F066845Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000210715F038272AGGAMNKNKAKLELFKVERQIEKKIVEHKNELGQFNKNCVFNELQRLWDRKKTLTNIINS
Ga0209992_1000210717F038272AGGAMTRNEAKLELFKVNRNIEKKVVAHANELGQFNKNCVFNELQRLWDRKKTLQNIING
Ga0209992_1000210720F007343GGAMRVSDLQPAKYPQSPSVENPNCDSHALFTNDFNKNSFIEANGDVEIVWNERYKYWEVPAFAEGREVYGIAKQRACDTWGCE
Ga0209992_1000210722F033836N/AMSISEYEYFGVVYNENAKDTRNTVGEGVPTVEQQEEGSSTEEERFIDVVNQTEIKSVALCALALLAGLCCAALLGCKTSAKVEGGAEIIELKPLKMQELMYPMHDYSKIC
Ga0209992_1000210725F066845AGGAMLNNRQIAIAKHNASKKRFADIFTGCLSAGTLKQTQKKIKTFKLPKNK
Ga0209992_1000210726F024570AGGAMAYVAYEIRQTKETPTGTRHLVRCNRLGKWAITSWVGSTGSAMGSVECQGNYDYVMKNWKKIVGKYV
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