NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10002993

Scaffold Ga0209992_10002993


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10002993 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14732
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009558Metagenome316Y
F015261Metagenome / Metatranscriptome256Y
F045997Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000299319F015261AGGMPVDVIWEDGKATIVIQCDGCDKEYEIFTNDTEGLEVCSFCGHYLEIDSESGETGDEEDSWD
Ga0209992_1000299326F009558N/AMYHDYYRHKTWEAKHYWVNQFGVIEHDIFSHIPPHHYVVKWKRGVDKCEKHFDNKKEAQAFFRKVKKTATHFYRIVKWY
Ga0209992_1000299330F045997AGGAMAEEFVDFGFSAVTADEYEKDQTDGVNTGSGGSASPEALAALDYKIEQIIGVLSSKPDEPSNDFGFSQEDKEKQDSQLQEIETKIDKILSLELDEERAQTTADILSQLNDATGESRTSSAKATEAVGKQDEIMQFLQDMSPKIDKILKLESLESLLEGTSGKLDSLSEVAGAVQTVTADPPDLSPIIEKLEWMDKDIQKILKMEQLEAVQALQKSSTDMTSLAKELEERKKDINLKYKSRMLAIEKLIIPLIENLQKDGNTKEYIRWPNRIPILEAQKDKILQVTRSEL
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