Scaffold Ga0209992

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10003980 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209992_10003980 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11969
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (60.71%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

11969

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (60.71%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (46.15%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

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Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005431	Metagenome / Metatranscriptome	401	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F015660	Metagenome	253	N
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y
F099988	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000398010	F004629	AGGA	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNKRTEMFTLINRLYGISADKDTYKSQDKPKMKIRLNGEQLQVYEFCILLLVKANEKDRNIIQLRNFPYKRSFRILKRFFMPISHEQCRIKYYNALYELLKLYHLKGRAYFLK
Ga0209992_1000398011	F011253	AGGTGG	MKDRKLELNNIIKNIAKNKSLPYANAITKIKKDRKGYFQAKDIKQKKQSLSTDRFQQYLKTIQEEENDT
Ga0209992_1000398012	F001839	N/A	MKYFEKVDKDLINNRALNSNEKLIYVICKSFENAPRGCRISHKYLMQRTGIKTKKTLIKCLDNLALFGLMARKQIGQGTCHYVFDKKTMQEYIRHNINKRKKISLRKNRQFKSYMNNLNDPQVIHINKFIKE
Ga0209992_1000398013	F004990	GGA	MYGDPKKKCCGCENGADLKEGNKYYCCDHYALYVLRKPMSQIEKELNNFKE
Ga0209992_1000398015	F008915	N/A	MGFIVDNIVSLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0209992_1000398016	F059875	N/A	MKAIVLIFGVITNNGQIDLIKVPNSELKNLNSCEKAIETIAKWQLNPKSKPGNYEVWGFYTYKNRPIMLQYCTENGVYSG
Ga0209992_1000398017	F046315	N/A	MNNSLNKKLIEYSANSGYNSNYIESYMTKNNLLPKEFRFRRSALDLLLKESNKKISDFIKDTYSPKEQKNKFAQISKILNPKKNAPKYFTENDLANDLAHWFNTFLNLDEVVSANYFVGDTVQIDCIGELFGNGQIGIHKIKDRHKINIHPKYASFQAVECLFEGKRGAMMLFKPSKTIDRNANNRSVICQDKKTKVVWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQISWCAEVKAAYYPTIYNT
Ga0209992_1000398019	F006892	GGAGG	MSDTGIIIPLKERIRDLETINLAHQKKNGQLRQEIQDKDKLIKELQEKLNNPLNKMREQGKI
Ga0209992_1000398024	F016879	N/A	MSVFKESFFEASFKTIEEFDNAEVASAKLNVSDDANLEIIDIKLNKSLIKTNNDKEHENATEQHSKTVPETK
Ga0209992_1000398027	F017558	N/A	MFFIIFKNKNNILTSYSNQIFSTEAEATDYAKRSLKKKDVWQVVRYDTENYNKYWYKA
Ga0209992_100039803	F005431	AGGA	MMDFDDEQKGYSAVIYIMESTNSVVVHFGGFNNISECRYFSTHIMEDFGIEQLLNVPQGVTVH
Ga0209992_100039804	F015660	N/A	MPNKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRGKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLAPKVYGKNDNLRVSGDKDSPLIVKWNG
Ga0209992_100039806	F099988	GAGG	MKTEFILYGLKLNEPDYLESIIHTSFNRNEIDKVKTLAIKKGYVRFRVATFNGESPNFADPKLINV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209992_10003980

Overview

Ecosystem & Geography

Associated Families

Sequences