NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10007078

Scaffold Ga0209992_10007078


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10007078 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7692
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F016878Metagenome244Y
F078839Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100070781F016878AGTAGMKSFKGYLLNEVAWTESLSTMLFDLPRAGFKDIHIPLSPSIFKRIWPKPVRTKAFHLTDLVGVQKLKKMQGSKRSIAAFYNMTDYMIQSGIRTDGGYVVELEGDVLAASPDDLSTQPDKSGRRWITVSTLMNSPTDSDPGLGGKSKLPGLEEDIKSLLVDIMAKNDLGPYKKTMSTNEVG
Ga0209992_1000707810F002715AGGAMAEELSDVKLEVGLLKNEVEARGKQTEALLQKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDSTVRDELKILHQRIGDLHDKQLDAQNRVEQRLDKLDQYKSKLMGMIVVVGGALGVTVALLTHFL
Ga0209992_100070784F078839AGGMTEEKLTTSIVLITFLALWFIVLFTFGLLVSQTSSYQNQVDELIKENAKITTLWMEKN
Ga0209992_100070788F000245GAGMKTYSRFKEGALDDKLDKYVSDEIKKRKLARFPVNATDDYKMKKGKPAFTFPSPTGDMVIHVWLRPMAKPAKSHTKAFNYELDDK
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