Scaffold Ga0209992_10019154

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209992_10019154

Scaffold Ga0209992_10019154

Overview

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10019154 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3762
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)		Depth (m)	470
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043090	Metagenome	157	Y
F071651	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_100191545	F071651	GGAG	LASESNCDYKTNVNTDFQGTIASSKNYNKTTYPHVEDTRKCIIKLDVKIKHSWYPTSGTYIFGPDMTETSACKKAEVRAKEAILRQIVPEKLNRTMNSKCAVTVRTVPVKKVPDETKKVVAEKLINKIMKKSSTQVVGQWKESGWKNVYSPVTKGCMVAKLIPTTVVVINGQRVAAYKEVCKVQ
Ga0209992_100191546	F043090	GAGG	MKYLIGFGFGVLATMFYPDLVPYIKSAFIESGVRDTAVETLMNVK

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