NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10020620

Scaffold Ga0209992_10020620


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10020620 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3573
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y
F060436Metagenome133N
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1002062012F013187AGGAGMTTKAKKKIKKKPKITWGWIYGDECPELWEHFGFPYPDPDDRMKLKFVKYESKEMQRG
Ga0209992_1002062014F012581AGGAGMAKFTIYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFESSGEEFYITSIEENEDNDV
Ga0209992_1002062015F029779AGGAGMTYKEKYEQLMESLVGDNAIERYTQEDILSYVYNLKNIEEKFYDNKK
Ga0209992_1002062016F008925AGGAGMTTKSKPTIDAVTLNLINKLKKIDDSINEGAWEYIHLGDIIRLQDAFNEAISHYDLKKEGGVHDYGADEGKYQQFYHSDYVCHTDPKAFDPSKV
Ga0209992_100206205F060436AGGAGMTRYNEINIKHFANLVQEIDVSKYTQEEYREIVEEIYMAIFRHNTKGEYVIETMPNDKTNWKVYKPTQTKEETLLIINGGKKDE
Ga0209992_100206209F105336GAGGMKLRPVQLNKIEQILSDLERKVEEMEQQDYMTFDLSKDLQNISYMLDILREEIESK
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Institute for Fundamental Biomedical Research
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