NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209992_10067242

Scaffold Ga0209992_10067242


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10067242 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1665
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F013187Metagenome273Y
F021207Metagenome220Y
F105326Metagenome100Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100672421F012581AGGAGMAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGEEFYITSIEESDDEX
Ga0209992_100672422F013187AGGAGMPTKKIKKKPRKNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQDG
Ga0209992_100672423F105326GGAGMEQRRNLTPTQHWELHQGLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSALGFIEEKRYANKKD
Ga0209992_100672424F021207AGGAGMSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVTWNKDVI
Ga0209992_100672426F105336GGAGMKLRQQQITRVEQILSDLERKVEEMEQQDYITYDLGKDLENISFMIDMLREEIENEVDXKKYRXSS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.