Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10001091 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10001091 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32371
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (7.84%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32371

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (7.84%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003127	Metagenome / Metatranscriptome	506	Y
F004474	Metagenome / Metatranscriptome	436	Y
F010918	Metagenome / Metatranscriptome	297	Y
F012672	Metagenome / Metatranscriptome	278	N
F038677	Metagenome	165	Y
F085715	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000109116	F038677	N/A	MAGEFDFLEGFGISSTDVAQPENVYEQFLLTVGNQVTKDLSDYIKANANNSGGLAASVVYFPTGALSFEIQADDYFKFQDQGVNSVGANNHGSEFSFRYPGVSPRMANAIQQAYGVTTSHAYAISHSIKEHGIRPKKIIETVLSEEVLDRIANDLAEVTGLIFSIKFDKATQR
Ga0244775_100010912	F004474	N/A	MNYLLSVENLKKLGLIHSNTDTKILAVAIKRSQDIQLQPALSTPLFKALLLRVQNNTWTQNYLDLMNDYVVPCLVAFVDYRCALLLNEKLTNKSVGRIQDENIQPNSDAETSALRDQLRKDAYFYKERLIVHLMADNGTKYPEYIETNSSPGHCSENMTKDRNGYTPINFII
Ga0244775_1000109120	F012672	AGGA	MNLVRLENYFNMAYSKEYIKNLELWSIEYIEECSSHKKETLSNKGEIIMVMDRHIPTIDYFLRIWIPIIRKEKGIVPSTWYEWLNCDDKLKSETIKKIDDLFKGLASDIVANEGKGIFYAKNRLGMHDRQQIETRTVDKFDFE
Ga0244775_1000109125	F085715	N/A	MFWEKDAYAIAKKLTNNHELHRDLVSFVFILLHKYELEANVLPKMFARFAWNQWNWKESAFNKEMRFPSNELGEIIQDESEDVPNKYQNLINSFLSTRPKDDQELFIKEVTKMHLYGMTYREIRDNTGICLDTIHKTIKKFKYDLYNYSGGDCESDAKLSTTEH
Ga0244775_1000109136	F010918	N/A	MKRFKITFNYFEGGKKRLGVRILEAYDRDHAIIKMDLYRPLILKVETL
Ga0244775_100010916	F003127	N/A	MSLCDMIAGYNDRTCTNGKGGIKSVLLFPLGAVTASTVLANEVTALTVSGETFLYKLKSNLSSYTAPIKVDKNNGTLWYEQSLSMILASDNKELRSEIHLLAQNEVVCLVENADGTIVALGFGEGLQIADANEYTSGVLKSDRRGHVVVLNGMENDAVPDVAPGVYATLLTQQSPVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10001091

Overview

Ecosystem & Geography

Associated Families

Sequences