NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10001527

Scaffold Ga0244775_10001527


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10001527 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26760
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F011136Metagenome / Metatranscriptome294Y
F026004Metagenome199Y
F040621Metagenome161N
F042339Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000152710F040621GAGMLNFNVPLHIQRERLATCKKCKFFKPLTQSCGTLIVGNTVELEENSVTHYKEKIKLCGCIMPIKTKFVFASCPAHKWFALDWKEDEIAQLDAFINRIHKANKIEPHDLQQLYAWATKVIGRKQDVSGCASCIRDLITEFRRQLNKVDSK
Ga0244775_1000152711F011136N/AMDRPEQDVEDIVCGGKIEAYINRALWLSWHSNRSDYAVKYRKYYELHSDKELDESKQDETWIGAFIDGEYLYSAIGRLNEYDSIILRLYSKPDFDYQELSKETGIPYSYLRTSIHRALKRIREYVELQRATAHTKRETSDL
Ga0244775_1000152728F009003N/AMKAKDKAWQLYSNYFDIVEGGEQLGQLALVHIKAVNAALHAVDEALTYAPDDIVNDFDGTGEYYSVKAYYHHVKNELLKLNNPKTKIE
Ga0244775_1000152733F042339N/AMEIDSLYQMEQLKVNYYAKITGIQANSYETLAEIYANKQAIDKAIATEKDAEIKQLRKRNTRLIITNTALTLGITAVALSTIYFAIL
Ga0244775_1000152734F026004N/AMEKIKLRNTVIIASVATLVLILTIVSVKSCRDKGDPAIDRLRSINDSLYDVIDLNNRKADSIFLKIDSLKIHQDTIIQQQQITNEIYRNETYNILSASPANANAQFRTTLKKSDSLLKAGFYTRTYNLRSSTFQSQLQ
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