NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10001871

Scaffold Ga0244775_10001871


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10001871 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23645
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (87.80%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003379Metagenome / Metatranscriptome490Y
F004051Metagenome / Metatranscriptome455Y
F017134Metagenome / Metatranscriptome242Y
F017829Metagenome / Metatranscriptome238Y
F020168Metagenome / Metatranscriptome225Y
F029434Metagenome / Metatranscriptome188Y
F030095Metagenome / Metatranscriptome186N
F050376Metagenome / Metatranscriptome145Y
F051930Metagenome / Metatranscriptome143Y
F099281Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100018711F099281GGAMATVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDLGALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGNYSTDTYSMTFDS
Ga0244775_1000187110F030095AGGVAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLHNHTAKLQVRDTQGGKKLAFTLTEQDGLTISSVEGKIKISISADRTNKMFFPKSAYDLVLVDPSVNKTRLLEGYMTLNRAVTV
Ga0244775_1000187114F051930AGGAGMRIQYVSTYISMSEDGLVEKLLCPVDQSILFCNQSLLDEIYLYCIECDYKKLLGLSTYQKIVKEVDKNV
Ga0244775_1000187120F003379AGGAGMKKVWALIVLIATAILSGAMLSKFLNWAGEREIFDFDLSEDIDNEELSAL
Ga0244775_1000187125F050376AGAAGGMNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0244775_1000187127F029434GAGMKRYTFGVWLDIDAEDENQAVSLFDSVVKNTFVSDSYCFEWKEVADEIAI
Ga0244775_1000187133F017134GAGGMELFTVACLNYEICGAQETFETESEYEILGDDYICAECYASDEMSFFETIGWADSDALASAGHGMDEDY
Ga0244775_1000187135F020168GAGMYDVIGSILGICLIAFLCSPIVLAVYMWNGAKFDDDNDGIEDLPNRW
Ga0244775_1000187138F004051GAGGMTIDNHLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLELPSKETRWTSVSAKTLLG
Ga0244775_1000187140F017829AGGMANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNLISNAKKVEVGI
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