NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10002292

Scaffold Ga0244775_10002292


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10002292 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20976
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (27.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039637Metagenome / Metatranscriptome163N
F057377Metagenome / Metatranscriptome136N
F058087Metagenome / Metatranscriptome135N
F093290Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000229212F057377GGTGGMKSVFSTRDIKLAAILCTLGFEFESPTSPASRIRRESGEESTVFHFISTSPSGQIADEVMRSFSEGADFVAAAPESPLAYMLAVLRNRDSLVAVIKSTPRQIVFERNGKIISISEDATEADKKRFAKFI
Ga0244775_1000229213F039637N/AMKKNTDTIDDLETDDEALREAGMREGTRKAGKWKMRPCVPGTISIIRSNMLEKRDEFWFVAAFAFVHIAPLEDVLAVDNDAIAFNRAVRHWQLDNLDSIAAQDELSAIVGAAWNRVNAAETKAQHQSPGSTTSGK
Ga0244775_1000229223F093290N/AMATQIIPKKSSVLGKIPLAGDLAVGELVQNLADHCLYSKDASGTVFRIGTRPVPDKVEVFDIIGSNLFYGKLAYADFPNSGSIYDSALWDISRTTTDAAGEVTAEASATGAWSNRTSLSY
Ga0244775_1000229228F058087AGGMNARRIALLMVLLSFVFLGMAFLTSCVNVPIPPFGDRIGELGNLQLALSAKYIPHTPPESPGDNGMAFAWQKYGEAKLLRDK
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