NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10002870

Scaffold Ga0244775_10002870


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10002870 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18528
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F010928Metagenome / Metatranscriptome297N
F060924Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000287024F060924AGCAGMGIGTGIGNSIPRGITGNAGIPTPFFEILAENGDFLIAESGTNPTFLITEQQ
Ga0244775_100028703F000918N/AMYKTNQQAWNEVMSGIKESERRTKICIEMFGQENLIGLSDDQRELFWQSV
Ga0244775_100028704F010928N/AMETQRFMGSGQLVDRLTAQVRDKGFAIALLKKRGDMTADGSLTAKGQARNRMTAEERALDRAGETSASATYNPETNRVTKNK
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