NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10002974

Scaffold Ga0244775_10002974


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10002974 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18227
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F007417Metagenome351Y
F008595Metagenome / Metatranscriptome331Y
F012117Metagenome / Metatranscriptome283N
F013088Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000297412F007417GAGGMTRYTLEVQLPSIGWVVAIKTSDLFYMANKRARLIKQGHTVKLTKTKGSK
Ga0244775_1000297418F008595GGAGMSEEDTKMENQEPVIINFNGTEYRASDLNEDQLGLAAKLNVAGKKLARLQDAYDDYVITNEYKNLVIESFDKAINAEAEVVEEE
Ga0244775_100029743F012117GGAGMDILGGMSNTNEGQQVYLAFKTAEQKFFVNGETPIEFQYLQLDPATFRSGWGAYRAASGFDFQWDDKFGVLNDKPDDDYKRAFSAWVLPQGHPHPLLWQRFTYAESSAFNSILGTFWNEKDAHPNQMPVVKYVGSKAIQVGMGKSSELTFEFAKFAERANEFILPAWADNDGTIKKDQDTGNSSVSDEDIPF
Ga0244775_100029744F006845AGGTGGMDTNSSLYEEDFEQFCRESYTKIQNACEFLGIINDEDYESFKERCYLRLEADYMNSIDKTIH
Ga0244775_100029747F013088GGAGMDEKNKKALWISEELHKEIKVFAVINNMNIEAATQYLLKLGVCSHELEKNNGTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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