NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10004772

Scaffold Ga0244775_10004772


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10004772 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13927
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (47.22%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015601Metagenome / Metatranscriptome253Y
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F046374Metagenome / Metatranscriptome151N
F054039Metagenome / Metatranscriptome140N
F066790Metagenome / Metatranscriptome126N
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F080054Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000477210F045760AGGAMASVSKSKQAYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRQTPASKTVWSHGNIRLAKLFKEFTGRASVDLFSSNPKVQASALSYRPDWENVKVIEGKVNFSLGARAHDSKGNLVWK
Ga0244775_1000477211F038245AGGAMKIYFGNANDDMFGDGLFEVNDSQYYYGVEHGTGPGGLDEVRIFDGCNRYLPIHNEAIPELIAALQEVRKIDEAVQLAKEMTDRAESNAQGYVTEAWHGQFEVDFDHTGL
Ga0244775_1000477215F046374AGGMAKTFGSLKSNKLDMLDKLTMGKFAGCRICDIIADDFEYLIWLNKQGFANFTTPVMTDLLTRAGFKEAEEYYQNEVAPWKDEDVPF
Ga0244775_1000477222F066790N/AMQRLQDIFKPYTLEDFIADSDPKDYKDIQRLEAVWQNYRERKLFNNCY
Ga0244775_1000477227F015601GGAGMAGYTKEFLVDAFISRYVNCDSISIEKLERLEQMANDLYDRVGRDSFRVYACLDAEAIREYKNKQTV
Ga0244775_1000477230F054039GAGMIDISPNYKRLAKILNKTRKSLTQTCHELGIDVDDIEDHLLVTVIDQCSHCNIWSQQLVLDLDENPVCPTCVRLTGL
Ga0244775_1000477232F080054GGAGMSTQPNYTAELEALILDVLLPVYEQHCKQRGIASLKSEINPELLKQLKKKKTVPRLFMPKTNI
Ga0244775_100047727F070116N/AMSKFRTWDSEILADAVKISLQIRAKIEEMCITTRTSPDGLPNSLIPTDNLYTLVCAYEAAYNALIENDLLKSGNLKTDKNIH
Ga0244775_100047729F078719AGGMEIIELYLLFALTTGISSCVIFLAPAIAQAKFIGIENSFTENTWLSYFTYTTITSFFAPFTVLPIFIPSFAERFKTGIGRAVMESQT
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