NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10010160

Scaffold Ga0244775_10010160


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10010160 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8974
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (62.96%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046374Metagenome / Metatranscriptome151N
F066790Metagenome / Metatranscriptome126N
F078719Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1001016014F046374GAGGMAKTFGNLKSNKLDMMDKLTMGKFAGCRICDIIADDFEYLIWLNKQGFANFTAPVMSDLLARAGFKEAEENYKNEVEPWEGEDVPL
Ga0244775_1001016023F066790GGAMLSNLMQRFRDMFKPYTLEDFISESDPKDYKDIQRLEAVWQNYQERKLFNNCY
Ga0244775_100101607F078719AGGMEIIEIYFLFALTTGITSCYVFLSPAIALAREHGVSNSFTENTLLSYLIYITITTITAPFSVLPIFIPSFAERFRTGLEKSVMENQI
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