Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10021297 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10021297 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5901
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (93.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5901

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (93.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003422	Metagenome / Metatranscriptome	487	Y
F009685	Metagenome / Metatranscriptome	314	Y
F033433	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100212971	F003422	N/A	TNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPSNQTKEEKMEETTTPAVTVPDEYNANLLVTYKVIHGYSDPEYATAKVASLEWDLHNARQTQKSNSVLHSKIDTVKDIITEAYADSDDQDTLRAIAEALGIELVREVQFTATLEVSGTYSYNVLDSDYELDLDSEVTDALYADSQNGNIEINDTEVCHVREA
Ga0244775_1002129712	F033433	GGAG	MNKPSLEILEVNYSCSPGGIDEFEVYSLDERDLHNPPIYSSTELEKAVRFCYELGKDFTVRTVAEWEERELAYEASR
Ga0244775_1002129714	F009685	AGGAGG	MKMSDQHIDAVLTEAQKLLWGGSETENIAAHNLISKLIQDRMSEKNLN
Ga0244775_100212972	F000311	GGA	MYFELTAPNRLSMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSKIRDKYNLVESYTSDYEPTGYTGR
Ga0244775_100212975	F001125	GGCGG	MGDRANFGFKDSKGDTIFLYGHWAGHGMLERLANAVSAAEPRWTDEAYATRICISRMIAEDWTQETGWGLSVNRILDNEHKIPVIDWSTQTFTLFEEDLTTEVFSLSLDKFCTKYSQPVM
Ga0244775_100212977	F002387	GAGG	MASFLEDVNQMVIDAVYQEIAEQLLEQWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEGYIC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10021297

Overview

Ecosystem & Geography

Associated Families

Sequences