NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10022364

Scaffold Ga0244775_10022364


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10022364 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5729
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029763Metagenome / Metatranscriptome187Y
F032856Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002236414F032856AGGMDEAKYRYWTSVYADYLISDISDELVENYEGGANVTDEFEVEEEYVNELIDYWIDNFTMGSHKCKEVIDNLSYDIFEDDDEYGVRPDSWEQAGMWALDHAIHHNDNIQAIYKMTNEKLQELWKKTN
Ga0244775_100223643F029763N/AMRKLIFIFLIATSFCYTQSNSIPPELYGNWYNQEQELLTIQPNNTFIRRSIDGVLAQGRLEIVNEELRVIRTDVNDEYDLLFHIGNTSLVITKPRSQEAWLFYRLGN
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