NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10027163

Scaffold Ga0244775_10027163


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10027163 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5120
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024554Metagenome205Y
F027851Metagenome / Metatranscriptome193Y
F038678Metagenome165Y
F049616Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100271631F024554N/AMKKAIVLFILFFNVANVCFAQKPPQVKNFTAIVEQCFCTGNNSKFHVVMKWNLIPKCTRYRIIKDGKQLTLLTNNENFHIDRAVLNEKTYTYQVGGLVPSGNLQLSLPVKVTIPKFSTKNPEAPTNLRTFGLWNNGAYDQLVWDANPDAVSYNIYRYSQKIGSSNTNSFTVSQLVFGEGWTYTVTAIDKNGLESFPSALSLARGEFAPNYNFGWTTRPPSTPGKYVTVAEWNNEKPRNFIKWQDQQVYGQDAPGAYNIYRDGKLIASNLWSQYYIDKDVMSGKTYRYVVASVNKNHFTTQETFGPAADITTRFGPPNPISTPVNITG
Ga0244775_100271636F027851N/AMFNSSSLLSKLLKKTVGIPEVNLNKLPFAGKIVGDWEEKSMKDLVKQLPSETIKRLINVCNEEISNR
Ga0244775_100271638F038678GAGGMKLNFEKIFFYFMLVIVSGSIGYAIKPAEPVDQKELERKYQNQQQVCSAAIHMMQDFSKKTYYKPKTKKELAIERMMSR
Ga0244775_100271639F049616N/AMKNKKDILVGVITIIATTGAMIFSLNYTSNAIAENAHKNTVPIIIDKKDPKYKIQNWGMNRTLN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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