NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10028800

Scaffold Ga0244775_10028800


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10028800 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4959
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F005389Metagenome / Metatranscriptome402Y
F018718Metagenome / Metatranscriptome233Y
F089896Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100288001F089896N/AMNTIYNNFAASKLSNNPKFSVMVEFTDFMGKQHRIVCNNRRKLAEANEFLKMFKTESVAINKILSEYP
Ga0244775_100288003F005389GAGGMANKSKQAAKRGNIYETVSNNIQKITRPSGTTSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG
Ga0244775_100288006F018718N/AMTIREFYVKNYPSDDMGDGINPTATFAGLLNQLIVGGDVYAYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK
Ga0244775_100288009F000785N/AMRVTNKRGMKFDCTKLMGWAQDLLGPSKCTAIAFTWESDEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKYGYKNNPYELEARANEKLVKRAYKKRK
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