NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10030040

Scaffold Ga0244775_10030040


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10030040 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4843
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012117Metagenome / Metatranscriptome283N
F013088Metagenome / Metatranscriptome274Y
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100300402F012117GGAGMVDILGGMSNSNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKAEGFEYSWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSILGSFWNQMDSSSANLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRTAEFVIPSWYLEQEAPVEDTFKSPNDGLSDKVAEMVNQNELSDDDIPF
Ga0244775_100300405F067646AGGAMIEWILYFIAGIFGLVAIGGIISVIAAIYIFNELD
Ga0244775_100300407F013088GGAGMDDKTKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKENKHGSK
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