NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10040824

Scaffold Ga0244775_10040824


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10040824 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4087
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015601Metagenome / Metatranscriptome253Y
F054039Metagenome / Metatranscriptome140N
F078723Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100408242F015601GGAGGMAGYTKQFLIDAFMSRYINCDHLSIEKLERLEIMANDLYDRVGRDQFRVYACLDAEAIREYKNKVTA
Ga0244775_100408245F054039AGCAGMSQVSPNYRKLAKVLNKTRKSLTQTCHELGIDVDDIEDHVLVEVIDQCSHCNIWSQQLVKDLDYNPVCPVCVRLTGL
Ga0244775_100408249F078723N/AMSYDILINNLVNGESVTVTKSDGTTYLEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTKERNELMDYIARLQEQNKRLQHEINSKTSATASSTGDSDSPTTGNG
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