NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10067440

Scaffold Ga0244775_10067440


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10067440 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3075
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y
F047671Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100674401F047671N/AYMAGGDLKAMAMGGVAAIVPVVLRWLNPADTAFGSTGK
Ga0244775_100674403F009883GGAGMNETSIVIMCLIAGALWAVMSYSVGFKEGERQGYTRGRAVARHAVTADRKVK
Ga0244775_100674404F001897GGAMMASFMDGYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAFRDQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMALVKSETPAADYDYWSTKHGDVPSYQTAAEAEQAGTPSFGSSADFAWTADAVPSCSHGSMRWNQSKPDAPKSWGGYFCSEKIKEKQCTPRWYVLRSTGTWEPQV
Ga0244775_100674406F000903N/AMIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYEYTPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNAPKMHIVGWMPVSIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI
Ga0244775_100674407F003182AGGAGMHILQFDCSICLKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIAEMSL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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