Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10070702 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2992 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001562 | Metagenome / Metatranscriptome | 670 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F009143 | Metagenome / Metatranscriptome | 322 | Y |
F024319 | Metagenome / Metatranscriptome | 206 | Y |
F029434 | Metagenome / Metatranscriptome | 188 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_100707022 | F001562 | GAGG | MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLAEMENE |
Ga0244775_100707023 | F029434 | AGGAG | MKKYTFGVWLDIDAEDEDMAVSLFDSVVKNTFVSDSYCFEWKEVADEIAI |
Ga0244775_100707026 | F003690 | GGA | MTISGFELVVSNEYGIEFDSFLGAIYLPWHTIIITALALIAYKIYKIKRGK |
Ga0244775_100707027 | F009143 | GGAG | MMTKWDTIQADVADAYIYLEEEEAYNKALAEGLEIGATEYDEDELSKSLTLDWND |
Ga0244775_100707029 | F024319 | AGG | MTNRIWESLNDYQLESDAKRLGYVACSAGCGRVTAWSLCVMCGGNYATHNLVGKGSN |
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