NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10074696

Scaffold Ga0244775_10074696


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10074696 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2902
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034926Metagenome / Metatranscriptome173N
F063695Metagenome129N
F084227Metagenome / Metatranscriptome112N
F085703Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100746962F063695AGGMNITAKDFDALTDTVMGWKGNGWEIQSDRFTDMVTFDWAVCYWVDSASSLILAKTFLQNNGHSYQESYDENMESYILLTNYDSYNMAVIA
Ga0244775_100746963F085703GGCGGMAAIEIYGAPVVEKYYCLYCSFDMTETMVCTDCNEYKSAVTLNEFVSMNGHYPKLRAVK
Ga0244775_100746964F084227GGCGGMINSIVIIGMIGLLLASNFIWYWQGFKDGRREGYVRGRDLSRQGFWQE
Ga0244775_100746967F034926AGAAGGMGYIEVYNIDKDGEWTDLNDIPFITTVNCQLCNEPTEAHDIILTARIVEGEVVAGTWQCRKCNTVNG
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