NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10122233

Scaffold Ga0244775_10122233


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10122233 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2206
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F014834Metagenome / Metatranscriptome259Y
F072518Metagenome / Metatranscriptome121Y
F082545Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101222332F082545N/AMDFTYITVLDFGDGAVCQYNLEEVGDNYIFQDKDEPQAEEIEKFLIDQGHRLKDCEWMMHADPTINQIKL
Ga0244775_101222333F014834N/AMKNTNEIEKQLKRKADAYIEQKAQEMFLIHEEIANYVGTSTNFIDYITHFNSYDSAAPENKSNHTAYADHHQTKKKYRLELEMNYKSKLVAKYTKELIMKLDIFE
Ga0244775_101222334F004523GGAMSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQHLDPKPLRFATYDTGYVRNISEGNSSCYQINKTKQVTYESGMTGVERIMIDSWEDRLIYLAKFIIKNYYQKPTYIMSDYVMDCLREAYVRDYNNKPSNRLPFGDEVQVIVNGHRYNLS
Ga0244775_101222336F072518N/AMTKFKVQFKNERTLKQLLSHAEQEVERWKEYGFVEDTTYWNAKVNDYKAQLYALYHEREEFDKLSQI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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