NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10125232

Scaffold Ga0244775_10125232


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10125232 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2176
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F004431Metagenome / Metatranscriptome438Y
F009143Metagenome / Metatranscriptome322Y
F093873Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101252324F093873AGGAMFSLKYTVGLGSTTLLVPSEEYANEFLDIVSQTRVIDTVTLTELPNYKPSTRKVYATTRSWE
Ga0244775_101252326F004431AGGAMKITYSLWDGAQLLGVDFTANSADEMNKVVADLMKVSRNVVAHMRKVEQN
Ga0244775_101252327F009143GAGGMMTKWDTIQADVADAYIYLEEEEAYNKALAEGLDIRSTQYDEDELSKSLTLDWND
Ga0244775_101252328F003690GGAMTISGFELVVSNEYGIEFDSFLGAIYLPWHTIILTALAVVAYKVYKRKRAK
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