NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10137533

Scaffold Ga0244775_10137533


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10137533 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2065
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015472Metagenome254Y
F033432Metagenome177Y
F039133Metagenome164N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101375332F039133N/AMNTTDKVIIKFKSRVPKMLYTAHYNGILLASGRDPVDLGEFYASKYCTEWILQDGNNFYTQRGVNK
Ga0244775_101375333F015472AGGAGMETFYLNNGGTRWYSAGKIQVTGEVNGKSYDKMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRVVR
Ga0244775_101375334F033432AGGMSDYRKKFLSLWSAIMEEEKWHKVNSPACKPTCKGWNAWAPLCECGENYCTFKPSGNLEDMQMVVVSKPLEF
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