NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10190936

Scaffold Ga0244775_10190936


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10190936 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1720
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F004431Metagenome / Metatranscriptome438Y
F008132Metagenome / Metatranscriptome338Y
F014129Metagenome / Metatranscriptome265Y
F014142Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101909361F014129AGGTGGMTTLNKIREITLENVSADEANQIVCVFCSDYAGSFFCGNCNEYKGLMTLGEWLAYTQES
Ga0244775_101909362F003690GGAGMTINGFELIISNDYGLEFDSFLGSIYLPWHTIAITTALLIAYKIYKRKKNI
Ga0244775_101909363F008132AGGMTKWDTIQADVADAYTYLDEEEAYNNMLDDEEDIFGFVKAIEIDHLTDEQLDEVFDMFGD
Ga0244775_101909364F004431AGAAGMTITYTIWDGSQFLGFQTAKSVDEMTNTVKELQKISKNVVAHMRKVETN
Ga0244775_101909365F014142GGAGMTNTLSVVVEPSHPMASSNTKSNEVFRLSNGNYISRMAYVYMVMSENLISHRYLTPNESKWVFANRVG
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Institute for Fundamental Biomedical Research
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