NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10194622

Scaffold Ga0244775_10194622


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10194622 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1702
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059963Metagenome133Y
F067739Metagenome125N
F070107Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101946223F067739AGGMIEYQVICLYRVGAGRNLTEKHATALHTHPSVVLTLLNADQHLDRYVKVIVDGKVRGYQSYRAGKRVTMEEVS
Ga0244775_101946224F059963AGAAGMNPDDRPISEWMQPVRPIRVLFQAGDDYDHRHYLHIFAMRTVGSECEYLTIDGIFVQARSKSVMFAETFIDGHWLRLGK
Ga0244775_101946225F070107N/ATERLIFEANELLQDVPIDASFTKRSVFKDENLFLGAIGEIAVIDYCWSNDLLAYKHQNNKSDIRLHSGHTMEVKAQKVTTTPEMHYRVNFASMMRDYEKSDFFFFTHVQFVAGTPEAVWLLGGCSWDKFFRMATLHHEGEAMMRHHADGNNVPSGRYFLVDCYDLPISQLAPPSAALKHFKSLQTKEEAT
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