Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10422192 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1095 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001460 | Metagenome / Metatranscriptome | 690 | Y |
F023344 | Metagenome / Metatranscriptome | 210 | Y |
F047059 | Metagenome / Metatranscriptome | 150 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0244775_104221921 | F047059 | GGAGG | LTKSSHFMEYMKIHKISLEQDLEDAKNNVPIPEDEYFESDAYYMGAIDTMEHILSVASDIMIDNERVY |
Ga0244775_104221922 | F001460 | GAG | MMLGYDKKDLDTMINSVHDAKLFYLRSPSDLMDKTQLRTDLEMTVSFLQGLWAEGYFD |
Ga0244775_104221923 | F023344 | AGGCGG | MEAFTDTVGEHLLGAIQVDIEQALFEDWNNANLDEGEAYAEYRFMQFAPDTLKQSYNEYYGYIEGDEFCL |
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