NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10684284

Scaffold Ga0244775_10684284


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10684284 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)827
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011658Metagenome / Metatranscriptome288Y
F070571Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_106842841F070571N/AMTKEELQVKIGTLESMISDSNIEISKYAEQLTDLKKQHADLSKPKLTPQQYDKLQVLVEEAVEGFDFDDLDNYSIDYGIDYDNRVTCESFCFDNADELARIIMQNIENMFAEIKEDNNQLNQD
Ga0244775_106842842F011658N/AMKTLYQQLKPEIKQALNDQEEKYPSLVKGVKIALKENYLWSHLSIGQARDLIYFTDAALASLSSYDWSYGEKFLVCED

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