NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179591_1010946

Scaffold Ga0179591_1010946


Overview

Basic Information
Taxon OID3300024347 Open in IMG/M
Scaffold IDGa0179591_1010946 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3844
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004385Metagenome / Metatranscriptome440Y
F004491Metagenome / Metatranscriptome436Y

Sequences

Protein IDFamilyRBSSequence
Ga0179591_10109465F004491N/AMVPLSPACGSMTKSGGANEHITPVGNRAEMLRIRKEPVPGPLVGQPYQYVDDFDLDGTIDIGSTTTLEGEPYAPVGRISQFFYRATSRGDQFRGDFQAVYDEGIQVALKYLGE
Ga0179591_10109466F004385AGGMFQPFKSLLAASLLLGVALTSAVAAEREDVRKAINLMTSVKMPFPEGLSRNRARTERVWLEREGATTGCIRLEDRRWCYDYIAPKGNRAEMLRIRNEPSRGVYIGALYHYVVDYDLDGLIDVGSTTQIESEDRRR
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