Basic Information | |
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Taxon OID | 3300024347 Open in IMG/M |
Scaffold ID | Ga0179591_1091998 Open in IMG/M |
Source Dataset Name | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3487 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium HLUCCO18 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F094222 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0179591_10919983 | F094222 | AGG | MELGIKILNGLFILISLAGSAWAAGAQAPGPEMSAGVFGMTLAAGVVYLIKRRKRS |
Ga0179591_10919984 | F094222 | AGGAG | MKIFGQLFFLISLAGSAWAVAAPAPGPEMSAGVIGMTLAAGAVYLIKRRKRS |
Ga0179591_10919985 | F094222 | GAGG | MMKIFGSFFFLISFAGSAWAGTPAAPGPEMSAGVIGMTLAAGVVYLIKRRKRS |
Ga0179591_10919986 | F094222 | GGAG | MKIFSSLFFLVFLGGSAWATPVGAPGPEMSAGVIGMTLAAGVVYLIKRRKRS |
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