NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179591_1091998

Scaffold Ga0179591_1091998


Overview

Basic Information
Taxon OID3300024347 Open in IMG/M
Scaffold IDGa0179591_1091998 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3487
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium HLUCCO18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094222Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0179591_10919983F094222AGGMELGIKILNGLFILISLAGSAWAAGAQAPGPEMSAGVFGMTLAAGVVYLIKRRKRS
Ga0179591_10919984F094222AGGAGMKIFGQLFFLISLAGSAWAVAAPAPGPEMSAGVIGMTLAAGAVYLIKRRKRS
Ga0179591_10919985F094222GAGGMMKIFGSFFFLISFAGSAWAGTPAAPGPEMSAGVIGMTLAAGVVYLIKRRKRS
Ga0179591_10919986F094222GGAGMKIFSSLFFLVFLGGSAWATPVGAPGPEMSAGVIGMTLAAGVVYLIKRRKRS
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