NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10040438

Scaffold Ga0244776_10040438


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10040438 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3698
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024091Metagenome / Metatranscriptome207Y
F025393Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_100404386F024091AGGAMSKIQEKLNGIMDEIQALMESHPRAHLEEGSNIHKLMASAGLYFAHMDDENKDYYQFVSMAIEEEREWNI
Ga0244776_100404387F025393AGAAGVEHLRSQYEYRIQYEQQYIQEETIPALNTPEDCHKYAMFVKGNEYFDNGRTYVFKDEFGKYVSTFVSQYSDIIEKNLEPGVKDAVLALQKKGYLTFTSCQGHADSKHRYIGVVFNTKEQKGQFMKEVRDLRCDIHWYDNVINSKERPCSEVPWWSEGGITLHIVWDDHSYDKVSQMERREKPYTDEELTKFWNVQMWRNYKHYECVVFSFGYPMVEKTLWERIHKYFFYNQYKVTSAYHDFCNKVNKLTEYLG
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