NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255141_1002179

Scaffold Ga0255141_1002179


Overview

Basic Information
Taxon OID3300024351 Open in IMG/M
Scaffold IDGa0255141_1002179 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3415
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010616Metagenome / Metatranscriptome301Y
F020513Metagenome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0255141_10021791F010616N/AHINFRKYDNGIITYQIMGPIEKVAVGERINKYGQKVPEKFTWIDPRTPEQVLRRADGTYTERGRGLYTYCVGEKGGGIWSMIDREQVSISAKNIANPWA
Ga0255141_10021794F020513AGGAMLDKQNLIIEEPGSPVANKGMAFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVSPGVDYATAVVTKCLMPNGKINFEFERFNEADTAQSQQSTEMVKYMLNSKNDSYQFVRDWVQDALLHKNGIVMVSPVRKSIVQYKEVEGTKDQLKVFEIMATEKGLTPKRENMRRVDVDLQGMMMEVEAGADPQDAVNASNVYRAKYKLTGYETTIRVKHVAQHYFVCNPTIPRIVDQDFVGFYDPMTIHECKAQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADKYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLANICPKPIVGNFFGYSLAERLVPMQEYGTAISRAEMAFAMQASTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPAK
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